J5_9RU8_004

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

9RU8|1|L5|A|3908, 9RU8|1|L5|A|4394, 9RU8|1|L5|G|4451, 9RU8|1|L5|U|4555, 9RU8|1|L5|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU8|1|L5|A|3903
9RU8|1|L5|G|3904
9RU8|1|L5|A|3905
9RU8|1|L5|A|3906
9RU8|1|L5|G|3907
9RU8|1|L5|A|3908
9RU8|1|L5|C|3909
9RU8|1|L5|C|3910
*
9RU8|1|L5|OMG|4392
9RU8|1|L5|G|4393
9RU8|1|L5|A|4394
9RU8|1|L5|U|4395
9RU8|1|L5|A|4396
9RU8|1|L5|A|4397
9RU8|1|L5|C|4398
9RU8|1|L5|U|4399
9RU8|1|L5|G|4400
*
9RU8|1|L5|C|4444
9RU8|1|L5|U|4445
9RU8|1|L5|U|4446
9RU8|1|L5|5MC|4447
9RU8|1|L5|G|4448
9RU8|1|L5|A|4449
9RU8|1|L5|U|4450
9RU8|1|L5|G|4451
9RU8|1|L5|U|4452
9RU8|1|L5|C|4453
*
9RU8|1|L5|G|4528
9RU8|1|L5|G|4529
9RU8|1|L5|UR3|4530
9RU8|1|L5|PSU|4531
9RU8|1|L5|PSU|4532
9RU8|1|L5|A|4533
9RU8|1|L5|G|4534
*
9RU8|1|L5|PSU|4552
9RU8|1|L5|A|4553
9RU8|1|L5|G|4554
9RU8|1|L5|U|4555
9RU8|1|L5|U|4556
9RU8|1|L5|U|4557

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain Lb

Large ribosomal subunit protein eL29

Chain Pt

Transfer RNA; tRNA