J5_9S3C_004
3D structure
- PDB id
- 9S3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9S3C|1|L5|A|3908, 9S3C|1|L5|A|4394, 9S3C|1|L5|U|4450, 9S3C|1|L5|G|4451, 9S3C|1|L5|U|4452, 9S3C|1|L5|U|4555, 9S3C|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9S3C|1|L5|A|3903
9S3C|1|L5|G|3904
9S3C|1|L5|A|3905
9S3C|1|L5|A|3906
9S3C|1|L5|G|3907
9S3C|1|L5|A|3908
9S3C|1|L5|C|3909
9S3C|1|L5|C|3910
*
9S3C|1|L5|G|4392
9S3C|1|L5|G|4393
9S3C|1|L5|A|4394
9S3C|1|L5|U|4395
9S3C|1|L5|A|4396
9S3C|1|L5|A|4397
9S3C|1|L5|C|4398
9S3C|1|L5|U|4399
9S3C|1|L5|G|4400
*
9S3C|1|L5|C|4444
9S3C|1|L5|U|4445
9S3C|1|L5|U|4446
9S3C|1|L5|C|4447
9S3C|1|L5|G|4448
9S3C|1|L5|A|4449
9S3C|1|L5|U|4450
9S3C|1|L5|G|4451
9S3C|1|L5|U|4452
9S3C|1|L5|C|4453
*
9S3C|1|L5|G|4528
9S3C|1|L5|G|4529
9S3C|1|L5|U|4530
9S3C|1|L5|U|4531
9S3C|1|L5|U|4532
9S3C|1|L5|A|4533
9S3C|1|L5|G|4534
*
9S3C|1|L5|U|4552
9S3C|1|L5|A|4553
9S3C|1|L5|G|4554
9S3C|1|L5|U|4555
9S3C|1|L5|U|4556
9S3C|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CP
- Transfer RNA; tRNA
- Chain CR
- Eukaryotic peptide chain release factor subunit 1
- Chain CZ
- nascent chain
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain Lb
- 60S ribosomal protein L29
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