J5_9S3D_003

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9S3D|1|L5|G|3620, 9S3D|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3D|1|L5|G|2855
9S3D|1|L5|C|2856
9S3D|1|L5|A|2857
9S3D|1|L5|A|2858
9S3D|1|L5|G|2859
9S3D|1|L5|C|2860
9S3D|1|L5|C|2861
9S3D|1|L5|G|2862
9S3D|1|L5|G|2863
*
9S3D|1|L5|U|2887
9S3D|1|L5|G|2888
*
9S3D|1|L5|U|3613
9S3D|1|L5|G|3614
*
9S3D|1|L5|C|3618
9S3D|1|L5|G|3619
9S3D|1|L5|G|3620
9S3D|1|L5|A|3621
9S3D|1|L5|C|3622
9S3D|1|L5|C|3623
9S3D|1|L5|A|3624
9S3D|1|L5|G|3625
9S3D|1|L5|G|3626
*
9S3D|1|L5|C|3835
9S3D|1|L5|A|3836
9S3D|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA