J5_9S3D_008

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9S3D|1|S2|G|126, 9S3D|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3D|1|S2|G|123
9S3D|1|S2|U|124
9S3D|1|S2|C|125
9S3D|1|S2|G|126
9S3D|1|S2|C|127
9S3D|1|S2|U|128
9S3D|1|S2|C|129
*
9S3D|1|S2|G|183
9S3D|1|S2|G|184
9S3D|1|S2|G|185
*
9S3D|1|S2|U|214
9S3D|1|S2|G|215
*
9S3D|1|S2|C|310
9S3D|1|S2|C|311
9S3D|1|S2|G|312
*
9S3D|1|S2|C|337
9S3D|1|S2|G|338
9S3D|1|S2|A|339
9S3D|1|S2|C|340
9S3D|1|S2|C|341

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8