J5_9SLG_009
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACAG*(OMC)CUCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 9SLG|1|a|A|2452, 9SLG|1|a|U|2613
- QA status
- Modified nucleotides: H2U, OMC, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SLG|1|a|G|2061
9SLG|1|a|A|2062
9SLG|1|a|A|2063
9SLG|1|a|A|2064
9SLG|1|a|G|2065
9SLG|1|a|A|2066
9SLG|1|a|C|2067
9SLG|1|a|C|2068
*
9SLG|1|a|G|2450
9SLG|1|a|G|2451
9SLG|1|a|A|2452
9SLG|1|a|H2U|2453
9SLG|1|a|A|2454
9SLG|1|a|A|2455
9SLG|1|a|C|2456
9SLG|1|a|A|2457
9SLG|1|a|G|2458
*
9SLG|1|a|OMC|2502
9SLG|1|a|C|2503
9SLG|1|a|U|2504
9SLG|1|a|C|2505
9SLG|1|a|G|2506
9SLG|1|a|2MA|2507
9SLG|1|a|PSU|2508
9SLG|1|a|G|2509
9SLG|1|a|U|2510
9SLG|1|a|C|2511
*
9SLG|1|a|G|2586
9SLG|1|a|G|2587
9SLG|1|a|U|2588
9SLG|1|a|U|2589
9SLG|1|a|U|2590
9SLG|1|a|A|2591
9SLG|1|a|G|2592
*
9SLG|1|a|C|2610
9SLG|1|a|G|2611
9SLG|1|a|G|2612
9SLG|1|a|U|2613
9SLG|1|a|C|2614
9SLG|1|a|C|2615
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- Large ribosomal subunit protein uL3
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: