J5_9SPF_002
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 9SPF|1|L5|C|2289, 9SPF|1|L5|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|G|1335
9SPF|1|L5|G|1336
9SPF|1|L5|A|1337
9SPF|1|L5|G|1338
9SPF|1|L5|U|1339
9SPF|1|L5|OMC|1340
*
9SPF|1|L5|G|1516
9SPF|1|L5|G|1517
9SPF|1|L5|A|1518
9SPF|1|L5|C|1519
*
9SPF|1|L5|G|1658
9SPF|1|L5|U|1659
9SPF|1|L5|U|1660
9SPF|1|L5|C|1661
*
9SPF|1|L5|G|2288
9SPF|1|L5|C|2289
9SPF|1|L5|C|2290
*
9SPF|1|L5|G|2345
9SPF|1|L5|C|2346
9SPF|1|L5|A|2347
9SPF|1|L5|G|2348
9SPF|1|L5|A|2349
9SPF|1|L5|U|2350
9SPF|1|L5|OMC|2351
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- Large ribosomal subunit protein uL15
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
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