J5_9SPF_005
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9SPF|1|L5|G|3922, 9SPF|1|L5|A|4376, 9SPF|1|L5|G|4377, 9SPF|1|L5|A|4378, 9SPF|1|L5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|PSU|3920
9SPF|1|L5|U|3921
9SPF|1|L5|G|3922
9SPF|1|L5|A|3923
*
9SPF|1|L5|U|4188
9SPF|1|L5|U|4189
9SPF|1|L5|U|4190
9SPF|1|L5|G|4191
*
9SPF|1|L5|C|4204
9SPF|1|L5|A|4205
*
9SPF|1|L5|OMU|4227
9SPF|1|L5|OMG|4228
*
9SPF|1|L5|C|4375
9SPF|1|L5|A|4376
9SPF|1|L5|G|4377
9SPF|1|L5|A|4378
9SPF|1|L5|A|4379
9SPF|1|L5|A|4380
9SPF|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42
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