J5_9SPF_007
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUA(OMG)
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|S2|C|30
9SPF|1|S2|U|31
9SPF|1|S2|U|32
9SPF|1|S2|G|33
9SPF|1|S2|PSU|34
*
9SPF|1|S2|A|521
9SPF|1|S2|A|522
9SPF|1|S2|A|523
9SPF|1|S2|U|524
9SPF|1|S2|A|525
9SPF|1|S2|A|526
9SPF|1|S2|C|527
*
9SPF|1|S2|G|558
9SPF|1|S2|G|559
9SPF|1|S2|A|560
9SPF|1|S2|A|561
9SPF|1|S2|U|562
9SPF|1|S2|G|563
9SPF|1|S2|A|564
9SPF|1|S2|G|565
*
9SPF|1|S2|C|585
9SPF|1|S2|G|586
9SPF|1|S2|A|587
9SPF|1|S2|G|588
9SPF|1|S2|G|589
9SPF|1|S2|A|590
9SPF|1|S2|U|591
9SPF|1|S2|C|592
9SPF|1|S2|C|593
9SPF|1|S2|A|594
9SPF|1|S2|U|595
*
9SPF|1|S2|A|641
9SPF|1|S2|U|642
9SPF|1|S2|A|643
9SPF|1|S2|OMG|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: