J5_9SPF_009

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCGCUC*GGG*UG*CCG*CGA

Length

17 nucleotides

Bulged bases

9SPF|1|S2|G|126, 9SPF|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|U|124
9SPF|1|S2|C|125
9SPF|1|S2|G|126
9SPF|1|S2|C|127
9SPF|1|S2|U|128
9SPF|1|S2|C|129
*
9SPF|1|S2|G|183
9SPF|1|S2|G|184
9SPF|1|S2|G|185
*
9SPF|1|S2|U|214
9SPF|1|S2|G|215
*
9SPF|1|S2|C|310
9SPF|1|S2|C|311
9SPF|1|S2|G|312
*
9SPF|1|S2|C|337
9SPF|1|S2|G|338
9SPF|1|S2|A|339

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8