J5_9SPI_009
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUCGCUC*GGG*UG*CCG*CGACC
- Length
- 20 nucleotides
- Bulged bases
- 9SPI|1|S2|G|126, 9SPI|1|S2|C|127
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPI|1|S2|G|123
9SPI|1|S2|U|124
9SPI|1|S2|C|125
9SPI|1|S2|G|126
9SPI|1|S2|C|127
9SPI|1|S2|U|128
9SPI|1|S2|C|129
*
9SPI|1|S2|G|183
9SPI|1|S2|G|184
9SPI|1|S2|G|185
*
9SPI|1|S2|U|214
9SPI|1|S2|G|215
*
9SPI|1|S2|C|310
9SPI|1|S2|C|311
9SPI|1|S2|G|312
*
9SPI|1|S2|C|337
9SPI|1|S2|G|338
9SPI|1|S2|A|339
9SPI|1|S2|C|340
9SPI|1|S2|C|341
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: