J5_9SRA_005

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAG*(4AC)GCAG*CGAC*GG*CGGAG

Length

20 nucleotides

Bulged bases

9SRA|1|1|G|903

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRA|1|1|C|807
9SRA|1|1|G|808
9SRA|1|1|A|809
9SRA|1|1|G|810
*
9SRA|1|1|4AC|835
9SRA|1|1|G|836
9SRA|1|1|C|837
9SRA|1|1|A|838
9SRA|1|1|G|839
*
9SRA|1|1|C|846
9SRA|1|1|G|847
9SRA|1|1|A|848
9SRA|1|1|C|849
*
9SRA|1|1|G|885
9SRA|1|1|G|886
*
9SRA|1|1|C|901
9SRA|1|1|G|902
9SRA|1|1|G|903
9SRA|1|1|A|904
9SRA|1|1|G|905

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein uL15

Chain BP

Large ribosomal subunit protein eL18