Loop J5_9SRA

3D structure

PDB id: 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

Loop

Sequence: CGAAGACC*(OMG)GAUAACAG*CCU(5MC)GCUGU*GUUUAG*CGGAUG
Length: 38 nucleotides
Bulged bases: 9SRA|1|1|A|2680, 9SRA|1|1|U|2736, 9SRA|1|1|A|2841, 9SRA|1|1|U|2842
QA status: Modified nucleotides: OMG, 5MC

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9SRA|1|1|C|2297
9SRA|1|1|G|2298
9SRA|1|1|A|2299
9SRA|1|1|A|2300
9SRA|1|1|G|2301
9SRA|1|1|A|2302
9SRA|1|1|C|2303
9SRA|1|1|C|2304
*
9SRA|1|1|OMG|2678
9SRA|1|1|G|2679
9SRA|1|1|A|2680
9SRA|1|1|U|2681
9SRA|1|1|A|2682
9SRA|1|1|A|2683
9SRA|1|1|C|2684
9SRA|1|1|A|2685
9SRA|1|1|G|2686
*
9SRA|1|1|C|2730
9SRA|1|1|C|2731
9SRA|1|1|U|2732
9SRA|1|1|5MC|2733
9SRA|1|1|G|2734
9SRA|1|1|C|2735
9SRA|1|1|U|2736
9SRA|1|1|G|2737
9SRA|1|1|U|2738
*
9SRA|1|1|G|2815
9SRA|1|1|U|2816
9SRA|1|1|U|2817
9SRA|1|1|U|2818
9SRA|1|1|A|2819
9SRA|1|1|G|2820
*
9SRA|1|1|C|2838
9SRA|1|1|G|2839
9SRA|1|1|G|2840
9SRA|1|1|A|2841
9SRA|1|1|U|2842
9SRA|1|1|G|2843

Current chains

Chain 1: rRNA 23S

Nearby chains

Chain BB: Large ribosomal subunit protein uL2
Chain BC: Large ribosomal subunit protein uL3
Chain BD: Large ribosomal subunit protein uL4
Chain BL: Large ribosomal subunit protein uL15
Chain BN: Large ribosomal subunit protein uL16
Chain H: Dehydrogenase

J5_9SRA_008