J5_9SRA_010

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*(4AC)GAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRA|1|2|C|42
9SRA|1|2|U|43
9SRA|1|2|A|44
9SRA|1|2|U|45
*
9SRA|1|2|A|412
9SRA|1|2|G|413
9SRA|1|2|U|414
9SRA|1|2|G|415
*
9SRA|1|2|C|433
9SRA|1|2|U|434
9SRA|1|2|U|435
9SRA|1|2|U|436
9SRA|1|2|U|437
9SRA|1|2|C|438
*
9SRA|1|2|G|458
9SRA|1|2|G|459
9SRA|1|2|A|460
9SRA|1|2|A|461
9SRA|1|2|U|462
9SRA|1|2|A|463
9SRA|1|2|A|464
9SRA|1|2|G|465
*
9SRA|1|2|4AC|511
9SRA|1|2|G|512
9SRA|1|2|A|513
9SRA|1|2|G|514

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AN

30S ribosomal protein S12

Chain AV

30S ribosomal protein S24e