J5_9SRA_011

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAG*CGGACGGC*GAU*AGG*CGCAG

Length

23 nucleotides

Bulged bases

9SRA|1|2|A|105, 9SRA|1|2|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRA|1|2|C|66
9SRA|1|2|G|67
9SRA|1|2|A|68
9SRA|1|2|G|69
*
9SRA|1|2|C|102
9SRA|1|2|G|103
9SRA|1|2|G|104
9SRA|1|2|A|105
9SRA|1|2|C|106
9SRA|1|2|G|107
9SRA|1|2|G|108
9SRA|1|2|C|109
*
9SRA|1|2|G|323
9SRA|1|2|A|324
9SRA|1|2|U|325
*
9SRA|1|2|A|346
9SRA|1|2|G|347
9SRA|1|2|G|348
*
9SRA|1|2|C|359
9SRA|1|2|G|360
9SRA|1|2|C|361
9SRA|1|2|A|362
9SRA|1|2|G|363

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AG

30S ribosomal protein S6e

Chain AJ

30S ribosomal protein S8e

Chain BJ

Large ribosomal subunit protein uL14