J5_9SRB_006

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAG*(4AC)GCAG*CGAC*GG*CGGAG

Length

20 nucleotides

Bulged bases

9SRB|1|1|G|903

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|1|C|807
9SRB|1|1|G|808
9SRB|1|1|A|809
9SRB|1|1|G|810
*
9SRB|1|1|4AC|835
9SRB|1|1|G|836
9SRB|1|1|C|837
9SRB|1|1|A|838
9SRB|1|1|G|839
*
9SRB|1|1|C|846
9SRB|1|1|G|847
9SRB|1|1|A|848
9SRB|1|1|C|849
*
9SRB|1|1|G|885
9SRB|1|1|G|886
*
9SRB|1|1|C|901
9SRB|1|1|G|902
9SRB|1|1|G|903
9SRB|1|1|A|904
9SRB|1|1|G|905

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein uL15

Chain BP

Large ribosomal subunit protein eL18