J5_9SRB_011

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*(4AC)GAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|2|C|42
9SRB|1|2|U|43
9SRB|1|2|A|44
9SRB|1|2|U|45
*
9SRB|1|2|A|412
9SRB|1|2|G|413
9SRB|1|2|U|414
9SRB|1|2|G|415
*
9SRB|1|2|C|433
9SRB|1|2|U|434
9SRB|1|2|U|435
9SRB|1|2|U|436
9SRB|1|2|U|437
9SRB|1|2|C|438
*
9SRB|1|2|G|458
9SRB|1|2|G|459
9SRB|1|2|A|460
9SRB|1|2|A|461
9SRB|1|2|U|462
9SRB|1|2|A|463
9SRB|1|2|A|464
9SRB|1|2|G|465
*
9SRB|1|2|4AC|511
9SRB|1|2|G|512
9SRB|1|2|A|513
9SRB|1|2|G|514

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AN

30S ribosomal protein S12

Chain AV

30S ribosomal protein S24e