J5_9SRC_001
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (4AC)GACGAAG*(4AC)GAAUG*(4AC)G*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 9SRC|1|1|C|164
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRC|1|1|4AC|161
9SRC|1|1|G|162
9SRC|1|1|A|163
9SRC|1|1|C|164
9SRC|1|1|G|165
9SRC|1|1|A|166
9SRC|1|1|A|167
9SRC|1|1|G|168
*
9SRC|1|1|4AC|229
9SRC|1|1|G|230
9SRC|1|1|A|231
9SRC|1|1|A|232
9SRC|1|1|U|233
9SRC|1|1|G|234
*
9SRC|1|1|4AC|243
9SRC|1|1|G|244
*
9SRC|1|1|C|257
9SRC|1|1|A|258
9SRC|1|1|C|259
*
9SRC|1|1|G|280
9SRC|1|1|G|281
9SRC|1|1|G|282
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BM
- Large ribosomal subunit protein eL15
- Chain BT
- Large ribosomal subunit protein uL23
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
- Chain Bk
- C2H2-type domain-containing protein
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