J5_9SRD_002
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GCAAAC*GGGUUGUA*UGAGUAC*GGAAGCUG*CAAC
- Length
- 33 nucleotides
- Bulged bases
- 9SRD|1|1|U|417, 9SRD|1|1|U|559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRD|1|1|G|372
9SRD|1|1|C|373
9SRD|1|1|A|374
9SRD|1|1|A|375
9SRD|1|1|A|376
9SRD|1|1|C|377
*
9SRD|1|1|G|411
9SRD|1|1|G|412
9SRD|1|1|G|413
9SRD|1|1|U|414
9SRD|1|1|U|415
9SRD|1|1|G|416
9SRD|1|1|U|417
9SRD|1|1|A|418
*
9SRD|1|1|U|526
9SRD|1|1|G|527
9SRD|1|1|A|528
9SRD|1|1|G|529
9SRD|1|1|U|530
9SRD|1|1|A|531
9SRD|1|1|C|532
*
9SRD|1|1|G|553
9SRD|1|1|G|554
9SRD|1|1|A|555
9SRD|1|1|A|556
9SRD|1|1|G|557
9SRD|1|1|C|558
9SRD|1|1|U|559
9SRD|1|1|G|560
*
9SRD|1|1|C|576
9SRD|1|1|A|577
9SRD|1|1|A|578
9SRD|1|1|C|579
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BG
- 50S ribosomal protein L7Ae
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Bk
- C2H2-type domain-containing protein
Coloring options: