J5_9SRD_005

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAG*(4AC)GCAG*CGAC*GG*CGGAG

Length

20 nucleotides

Bulged bases

9SRD|1|1|G|903

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|C|807
9SRD|1|1|G|808
9SRD|1|1|A|809
9SRD|1|1|G|810
*
9SRD|1|1|4AC|835
9SRD|1|1|G|836
9SRD|1|1|C|837
9SRD|1|1|A|838
9SRD|1|1|G|839
*
9SRD|1|1|C|846
9SRD|1|1|G|847
9SRD|1|1|A|848
9SRD|1|1|C|849
*
9SRD|1|1|G|885
9SRD|1|1|G|886
*
9SRD|1|1|C|901
9SRD|1|1|G|902
9SRD|1|1|G|903
9SRD|1|1|A|904
9SRD|1|1|G|905

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein uL15

Chain BP

Large ribosomal subunit protein eL18