J5_9SRD_010

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*(4AC)GAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|42
9SRD|1|2|U|43
9SRD|1|2|A|44
9SRD|1|2|U|45
*
9SRD|1|2|A|412
9SRD|1|2|G|413
9SRD|1|2|U|414
9SRD|1|2|G|415
*
9SRD|1|2|C|433
9SRD|1|2|U|434
9SRD|1|2|U|435
9SRD|1|2|U|436
9SRD|1|2|U|437
9SRD|1|2|C|438
*
9SRD|1|2|G|458
9SRD|1|2|G|459
9SRD|1|2|A|460
9SRD|1|2|A|461
9SRD|1|2|U|462
9SRD|1|2|A|463
9SRD|1|2|A|464
9SRD|1|2|G|465
*
9SRD|1|2|4AC|511
9SRD|1|2|G|512
9SRD|1|2|A|513
9SRD|1|2|G|514

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AN

30S ribosomal protein S12

Chain AV

30S ribosomal protein S24e