J5_9SRD_011

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAG*CGGACGGC*GAU*AGG*CGCAG

Length

23 nucleotides

Bulged bases

9SRD|1|2|A|68, 9SRD|1|2|A|105, 9SRD|1|2|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|66
9SRD|1|2|G|67
9SRD|1|2|A|68
9SRD|1|2|G|69
*
9SRD|1|2|C|102
9SRD|1|2|G|103
9SRD|1|2|G|104
9SRD|1|2|A|105
9SRD|1|2|C|106
9SRD|1|2|G|107
9SRD|1|2|G|108
9SRD|1|2|C|109
*
9SRD|1|2|G|323
9SRD|1|2|A|324
9SRD|1|2|U|325
*
9SRD|1|2|A|346
9SRD|1|2|G|347
9SRD|1|2|G|348
*
9SRD|1|2|C|359
9SRD|1|2|G|360
9SRD|1|2|C|361
9SRD|1|2|A|362
9SRD|1|2|G|363

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AG

30S ribosomal protein S6e

Chain AJ

30S ribosomal protein S8e

Chain BJ

Large ribosomal subunit protein uL14