J5_9SRE_005
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CGAG*(4AC)GCAG*CGAC*GG*CGGAG
- Length
- 20 nucleotides
- Bulged bases
- 9SRE|1|1|G|903
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|1|C|807
9SRE|1|1|G|808
9SRE|1|1|A|809
9SRE|1|1|G|810
*
9SRE|1|1|4AC|835
9SRE|1|1|G|836
9SRE|1|1|C|837
9SRE|1|1|A|838
9SRE|1|1|G|839
*
9SRE|1|1|C|846
9SRE|1|1|G|847
9SRE|1|1|A|848
9SRE|1|1|C|849
*
9SRE|1|1|G|885
9SRE|1|1|G|886
*
9SRE|1|1|C|901
9SRE|1|1|G|902
9SRE|1|1|G|903
9SRE|1|1|A|904
9SRE|1|1|G|905
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BP
- Large ribosomal subunit protein eL18
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