J5_9SRE_010

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*(4AC)GAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|C|42
9SRE|1|2|U|43
9SRE|1|2|A|44
9SRE|1|2|U|45
*
9SRE|1|2|A|412
9SRE|1|2|G|413
9SRE|1|2|U|414
9SRE|1|2|G|415
*
9SRE|1|2|C|433
9SRE|1|2|U|434
9SRE|1|2|U|435
9SRE|1|2|U|436
9SRE|1|2|U|437
9SRE|1|2|C|438
*
9SRE|1|2|G|458
9SRE|1|2|G|459
9SRE|1|2|A|460
9SRE|1|2|A|461
9SRE|1|2|U|462
9SRE|1|2|A|463
9SRE|1|2|A|464
9SRE|1|2|G|465
*
9SRE|1|2|4AC|511
9SRE|1|2|G|512
9SRE|1|2|A|513
9SRE|1|2|G|514

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AN

30S ribosomal protein S12

Chain AV

30S ribosomal protein S24e