J5_9SS1_002

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS1|1|D1|C|36
9SS1|1|D1|U|37
9SS1|1|D1|G|38
9SS1|1|D1|G|39
*
9SS1|1|D1|C|403
9SS1|1|D1|G|404
9SS1|1|D1|U|405
9SS1|1|D1|G|406
*
9SS1|1|D1|C|436
9SS1|1|D1|U|437
9SS1|1|D1|U|438
9SS1|1|D1|U|439
9SS1|1|D1|C|440
9SS1|1|D1|A|441
9SS1|1|D1|G|442
*
9SS1|1|D1|C|492
9SS1|1|D1|A|493
9SS1|1|D1|G|494
9SS1|1|D1|A|495
9SS1|1|D1|A|496
9SS1|1|D1|G|497
9SS1|1|D1|A|498
9SS1|1|D1|A|499
9SS1|1|D1|G|500
*
9SS1|1|D1|C|545
9SS1|1|D1|A|546
9SS1|1|D1|A|547
9SS1|1|D1|G|548

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12