J5_9SS2_002

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS2|1|D1|C|36
9SS2|1|D1|U|37
9SS2|1|D1|G|38
9SS2|1|D1|G|39
*
9SS2|1|D1|C|403
9SS2|1|D1|G|404
9SS2|1|D1|U|405
9SS2|1|D1|G|406
*
9SS2|1|D1|C|436
9SS2|1|D1|U|437
9SS2|1|D1|U|438
9SS2|1|D1|U|439
9SS2|1|D1|C|440
9SS2|1|D1|A|441
9SS2|1|D1|G|442
*
9SS2|1|D1|C|492
9SS2|1|D1|A|493
9SS2|1|D1|G|494
9SS2|1|D1|A|495
9SS2|1|D1|A|496
9SS2|1|D1|G|497
9SS2|1|D1|A|498
9SS2|1|D1|A|499
9SS2|1|D1|G|500
*
9SS2|1|D1|C|545
9SS2|1|D1|A|546
9SS2|1|D1|A|547
9SS2|1|D1|G|548

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12