J5_9SS6_002

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D1|C|36
9SS6|1|D1|U|37
9SS6|1|D1|G|38
9SS6|1|D1|G|39
*
9SS6|1|D1|C|403
9SS6|1|D1|G|404
9SS6|1|D1|U|405
9SS6|1|D1|G|406
*
9SS6|1|D1|C|436
9SS6|1|D1|U|437
9SS6|1|D1|U|438
9SS6|1|D1|U|439
9SS6|1|D1|C|440
9SS6|1|D1|A|441
9SS6|1|D1|G|442
*
9SS6|1|D1|C|492
9SS6|1|D1|A|493
9SS6|1|D1|G|494
9SS6|1|D1|A|495
9SS6|1|D1|A|496
9SS6|1|D1|G|497
9SS6|1|D1|A|498
9SS6|1|D1|A|499
9SS6|1|D1|G|500
*
9SS6|1|D1|C|545
9SS6|1|D1|A|546
9SS6|1|D1|A|547
9SS6|1|D1|G|548

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12