J5_9T61_002

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUAG*CGUG*CUUUCGG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T61|1|A|C|35
9T61|1|A|U|36
9T61|1|A|A|37
9T61|1|A|G|38
*
9T61|1|A|C|400
9T61|1|A|G|401
9T61|1|A|U|402
9T61|1|A|G|403
*
9T61|1|A|C|433
9T61|1|A|U|434
9T61|1|A|U|435
9T61|1|A|U|436
9T61|1|A|C|437
9T61|1|A|G|438
9T61|1|A|G|439
*
9T61|1|A|C|489
9T61|1|A|A|490
9T61|1|A|G|491
9T61|1|A|A|492
9T61|1|A|A|493
9T61|1|A|G|494
9T61|1|A|A|495
9T61|1|A|A|496
9T61|1|A|G|497
*
9T61|1|A|C|542
9T61|1|A|A|543
9T61|1|A|A|544
9T61|1|A|G|545

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12