J5_9T7H_001

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)GA*UG*(4AC)G*CAC*GGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T7H|1|1|4AC|161
9T7H|1|1|G|162
9T7H|1|1|A|163
*
9T7H|1|1|U|233
9T7H|1|1|G|234
*
9T7H|1|1|4AC|243
9T7H|1|1|G|244
*
9T7H|1|1|C|257
9T7H|1|1|A|258
9T7H|1|1|C|259
*
9T7H|1|1|G|280
9T7H|1|1|G|281
9T7H|1|1|G|282

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BM

Large ribosomal subunit protein eL15

Chain BT

Large ribosomal subunit protein uL23

Chain Be

Large ribosomal subunit protein eL37

Chain Bk

C2H2-type domain-containing protein