J5_9T7H_009
3D structure
- PDB id
- 9T7H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGAAGACC*(OMG)GAUAACAG*CCU(5MC)GCUGU*GUUUAG*CGGAUG
- Length
- 38 nucleotides
- Bulged bases
- 9T7H|1|1|A|2680, 9T7H|1|1|U|2736, 9T7H|1|1|U|2817, 9T7H|1|1|A|2841, 9T7H|1|1|U|2842
- QA status
- Modified nucleotides: OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9T7H|1|1|C|2297
9T7H|1|1|G|2298
9T7H|1|1|A|2299
9T7H|1|1|A|2300
9T7H|1|1|G|2301
9T7H|1|1|A|2302
9T7H|1|1|C|2303
9T7H|1|1|C|2304
*
9T7H|1|1|OMG|2678
9T7H|1|1|G|2679
9T7H|1|1|A|2680
9T7H|1|1|U|2681
9T7H|1|1|A|2682
9T7H|1|1|A|2683
9T7H|1|1|C|2684
9T7H|1|1|A|2685
9T7H|1|1|G|2686
*
9T7H|1|1|C|2730
9T7H|1|1|C|2731
9T7H|1|1|U|2732
9T7H|1|1|5MC|2733
9T7H|1|1|G|2734
9T7H|1|1|C|2735
9T7H|1|1|U|2736
9T7H|1|1|G|2737
9T7H|1|1|U|2738
*
9T7H|1|1|G|2815
9T7H|1|1|U|2816
9T7H|1|1|U|2817
9T7H|1|1|U|2818
9T7H|1|1|A|2819
9T7H|1|1|G|2820
*
9T7H|1|1|C|2838
9T7H|1|1|G|2839
9T7H|1|1|G|2840
9T7H|1|1|A|2841
9T7H|1|1|U|2842
9T7H|1|1|G|2843
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BN
- Large ribosomal subunit protein uL16
Coloring options: