J5_9T7H_012

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAG*CGGACGGC*GAU*AGG*CGCAG

Length

23 nucleotides

Bulged bases

9T7H|1|2|A|68, 9T7H|1|2|A|105, 9T7H|1|2|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T7H|1|2|C|66
9T7H|1|2|G|67
9T7H|1|2|A|68
9T7H|1|2|G|69
*
9T7H|1|2|C|102
9T7H|1|2|G|103
9T7H|1|2|G|104
9T7H|1|2|A|105
9T7H|1|2|C|106
9T7H|1|2|G|107
9T7H|1|2|G|108
9T7H|1|2|C|109
*
9T7H|1|2|G|323
9T7H|1|2|A|324
9T7H|1|2|U|325
*
9T7H|1|2|A|346
9T7H|1|2|G|347
9T7H|1|2|G|348
*
9T7H|1|2|C|359
9T7H|1|2|G|360
9T7H|1|2|C|361
9T7H|1|2|A|362
9T7H|1|2|G|363

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AG

30S ribosomal protein S6e

Chain AJ

30S ribosomal protein S8e

Chain BJ

Large ribosomal subunit protein uL14