Loop J5_9TI6

3D structure

PDB id: 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å

Loop

Sequence: GAAAGACC*GGA(H2U)AACA*UCG(2MA)UGUC*GGUUCAG*CGGUCC
Length: 37 nucleotides
Bulged bases: 9TI6|1|A|A|2089, 9TI6|1|A|A|2475, 9TI6|1|A|H2U|2476, 9TI6|1|A|U|2636
QA status: Modified nucleotides: H2U, 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9TI6|1|A|G|2084
9TI6|1|A|A|2085
9TI6|1|A|A|2086
9TI6|1|A|A|2087
9TI6|1|A|G|2088
9TI6|1|A|A|2089
9TI6|1|A|C|2090
9TI6|1|A|C|2091
*
9TI6|1|A|G|2473
9TI6|1|A|G|2474
9TI6|1|A|A|2475
9TI6|1|A|H2U|2476
9TI6|1|A|A|2477
9TI6|1|A|A|2478
9TI6|1|A|C|2479
9TI6|1|A|A|2480
*
9TI6|1|A|U|2527
9TI6|1|A|C|2528
9TI6|1|A|G|2529
9TI6|1|A|2MA|2530
9TI6|1|A|U|2531
9TI6|1|A|G|2532
9TI6|1|A|U|2533
9TI6|1|A|C|2534
*
9TI6|1|A|G|2609
9TI6|1|A|G|2610
9TI6|1|A|U|2611
9TI6|1|A|U|2612
9TI6|1|A|C|2613
9TI6|1|A|A|2614
9TI6|1|A|G|2615
*
9TI6|1|A|C|2633
9TI6|1|A|G|2634
9TI6|1|A|G|2635
9TI6|1|A|U|2636
9TI6|1|A|C|2637
9TI6|1|A|C|2638

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 5: Large ribosomal subunit protein bL32
Chain G: 50S ribosomal protein L2
Chain H: 50S ribosomal protein L3
Chain I: 50S ribosomal protein L4
Chain O: 50S ribosomal protein L15
Chain P: 50S ribosomal protein L16
Chain V: 50S ribosomal protein L22

J5_9TI6_006