J5_9TI7_002

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9TI7|1|A|U|301, 9TI7|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TI7|1|A|C|271
9TI7|1|A|C|272
9TI7|1|A|A|273
9TI7|1|A|A|274
9TI7|1|A|A|275
9TI7|1|A|C|276
*
9TI7|1|A|G|295
9TI7|1|A|G|296
9TI7|1|A|G|297
9TI7|1|A|U|298
9TI7|1|A|U|299
9TI7|1|A|G|300
9TI7|1|A|U|301
9TI7|1|A|A|302
*
9TI7|1|A|U|415
9TI7|1|A|G|416
9TI7|1|A|A|417
9TI7|1|A|G|418
9TI7|1|A|U|419
9TI7|1|A|A|420
9TI7|1|A|C|421
*
9TI7|1|A|G|445
9TI7|1|A|G|446
9TI7|1|A|A|447
9TI7|1|A|A|448
9TI7|1|A|U|449
9TI7|1|A|C|450
9TI7|1|A|U|451
9TI7|1|A|G|452
*
9TI7|1|A|U|467
9TI7|1|A|A|468
9TI7|1|A|A|469
9TI7|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28