J5_9TI7_006
3D structure
- PDB id
- 9TI7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)UGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9TI7|1|A|A|2089, 9TI7|1|A|A|2475, 9TI7|1|A|H2U|2476, 9TI7|1|A|U|2636
- QA status
- Modified nucleotides: H2U, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TI7|1|A|G|2084
9TI7|1|A|A|2085
9TI7|1|A|A|2086
9TI7|1|A|A|2087
9TI7|1|A|G|2088
9TI7|1|A|A|2089
9TI7|1|A|C|2090
9TI7|1|A|C|2091
*
9TI7|1|A|G|2473
9TI7|1|A|G|2474
9TI7|1|A|A|2475
9TI7|1|A|H2U|2476
9TI7|1|A|A|2477
9TI7|1|A|A|2478
9TI7|1|A|C|2479
9TI7|1|A|A|2480
*
9TI7|1|A|U|2527
9TI7|1|A|C|2528
9TI7|1|A|G|2529
9TI7|1|A|2MA|2530
9TI7|1|A|U|2531
9TI7|1|A|G|2532
9TI7|1|A|U|2533
9TI7|1|A|C|2534
*
9TI7|1|A|G|2609
9TI7|1|A|G|2610
9TI7|1|A|U|2611
9TI7|1|A|U|2612
9TI7|1|A|C|2613
9TI7|1|A|A|2614
9TI7|1|A|G|2615
*
9TI7|1|A|C|2633
9TI7|1|A|G|2634
9TI7|1|A|G|2635
9TI7|1|A|U|2636
9TI7|1|A|C|2637
9TI7|1|A|C|2638
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain G
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L22
Coloring options: