J5_9TKN_003

3D structure

PDB id

9TKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 and IF1 bound (30S PIC-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9TKN|1|D1|A|109, 9TKN|1|D1|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKN|1|D1|C|58
9TKN|1|D1|A|59
9TKN|1|D1|A|60
9TKN|1|D1|G|61
*
9TKN|1|D1|C|106
9TKN|1|D1|G|107
9TKN|1|D1|G|108
9TKN|1|D1|A|109
9TKN|1|D1|C|110
9TKN|1|D1|G|111
9TKN|1|D1|G|112
9TKN|1|D1|G|113
*
9TKN|1|D1|C|314
9TKN|1|D1|A|315
9TKN|1|D1|C|316
*
9TKN|1|D1|G|337
9TKN|1|D1|A|338
9TKN|1|D1|C|339
*
9TKN|1|D1|G|350
9TKN|1|D1|G|351
9TKN|1|D1|C|352
9TKN|1|D1|A|353
9TKN|1|D1|G|354

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20

Chain F2

Translation initiation factor IF-2