J5_9TKP_001

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D1|C|36
9TKP|1|D1|U|37
9TKP|1|D1|G|38
9TKP|1|D1|G|39
*
9TKP|1|D1|C|403
9TKP|1|D1|G|404
9TKP|1|D1|U|405
9TKP|1|D1|G|406
*
9TKP|1|D1|C|436
9TKP|1|D1|U|437
9TKP|1|D1|U|438
9TKP|1|D1|U|439
9TKP|1|D1|C|440
*
9TKP|1|D1|G|497
9TKP|1|D1|A|498
9TKP|1|D1|A|499
9TKP|1|D1|G|500
*
9TKP|1|D1|C|545
9TKP|1|D1|A|546
9TKP|1|D1|A|547
9TKP|1|D1|G|548

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12

Chain F2

Translation initiation factor IF-2