J5_9TKP_007

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9TKP|1|D2|U|1758, 9TKP|1|D2|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|G|1674
9TKP|1|D2|C|1675
9TKP|1|D2|A|1676
9TKP|1|D2|A|1677
9TKP|1|D2|A|1678
9TKP|1|D2|A|1679
9TKP|1|D2|U|1680
9TKP|1|D2|G|1681
9TKP|1|D2|G|1682
*
9TKP|1|D2|C|1706
9TKP|1|D2|G|1707
*
9TKP|1|D2|U|1751
9TKP|1|D2|C|1752
*
9TKP|1|D2|G|1756
9TKP|1|D2|A|1757
9TKP|1|D2|U|1758
9TKP|1|D2|A|1759
9TKP|1|D2|C|1760
9TKP|1|D2|C|1761
9TKP|1|D2|A|1762
9TKP|1|D2|G|1763
9TKP|1|D2|C|1764
*
9TKP|1|D2|G|1988
9TKP|1|D2|G|1989
9TKP|1|D2|C|1990

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BN

Large ribosomal subunit protein uL14

Chain BS

Large ribosomal subunit protein bL19

Chain D1

Small subunit ribosomal RNA; SSU rRNA