J5_9TKQ_003
3D structure
- PDB id
- 9TKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9TKQ|1|D1|A|109, 9TKQ|1|D1|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TKQ|1|D1|C|58
9TKQ|1|D1|A|59
9TKQ|1|D1|A|60
9TKQ|1|D1|G|61
*
9TKQ|1|D1|C|106
9TKQ|1|D1|G|107
9TKQ|1|D1|G|108
9TKQ|1|D1|A|109
9TKQ|1|D1|C|110
9TKQ|1|D1|G|111
9TKQ|1|D1|G|112
9TKQ|1|D1|G|113
*
9TKQ|1|D1|C|314
9TKQ|1|D1|A|315
9TKQ|1|D1|C|316
*
9TKQ|1|D1|G|337
9TKQ|1|D1|A|338
9TKQ|1|D1|C|339
*
9TKQ|1|D1|G|350
9TKQ|1|D1|G|351
9TKQ|1|D1|C|352
9TKQ|1|D1|A|353
9TKQ|1|D1|G|354
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AO
- Small ribosomal subunit protein bS16
- Chain AS
- Small ribosomal subunit protein bS20
- Chain BN
- Large ribosomal subunit protein uL14
- Chain BS
- Large ribosomal subunit protein bL19
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