J5_9TKQ_004

3D structure

PDB id

9TKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9TKQ|1|D2|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKQ|1|D2|C|47
9TKQ|1|D2|G|48
9TKQ|1|D2|A|49
9TKQ|1|D2|U|50
9TKQ|1|D2|G|51
9TKQ|1|D2|A|52
9TKQ|1|D2|A|53
9TKQ|1|D2|G|54
*
9TKQ|1|D2|C|116
9TKQ|1|D2|G|117
9TKQ|1|D2|A|118
9TKQ|1|D2|A|119
9TKQ|1|D2|U|120
9TKQ|1|D2|G|121
*
9TKQ|1|D2|C|130
9TKQ|1|D2|A|131
*
9TKQ|1|D2|U|148
9TKQ|1|D2|A|149
9TKQ|1|D2|U|150
*
9TKQ|1|D2|A|176
9TKQ|1|D2|G|177
9TKQ|1|D2|G|178

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34