J5_9TKQ_006
3D structure
- PDB id
- 9TKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9TKQ|1|D2|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TKQ|1|D2|C|584
9TKQ|1|D2|G|585
9TKQ|1|D2|A|586
9TKQ|1|D2|C|587
9TKQ|1|D2|U|588
9TKQ|1|D2|U|589
*
9TKQ|1|D2|A|668
9TKQ|1|D2|G|669
9TKQ|1|D2|A|670
9TKQ|1|D2|C|671
*
9TKQ|1|D2|G|809
9TKQ|1|D2|U|810
9TKQ|1|D2|U|811
9TKQ|1|D2|C|812
*
9TKQ|1|D2|G|1195
9TKQ|1|D2|C|1196
*
9TKQ|1|D2|G|1250
9TKQ|1|D2|C|1251
9TKQ|1|D2|G|1252
9TKQ|1|D2|A|1253
9TKQ|1|D2|A|1254
9TKQ|1|D2|U|1255
9TKQ|1|D2|G|1256
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BO
- Large ribosomal subunit protein uL15
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BU
- Large ribosomal subunit protein bL21
Coloring options: