J5_9TKQ_007
3D structure
- PDB id
- 9TKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9TKQ|1|D2|U|1758, 9TKQ|1|D2|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TKQ|1|D2|G|1674
9TKQ|1|D2|C|1675
9TKQ|1|D2|A|1676
9TKQ|1|D2|A|1677
9TKQ|1|D2|A|1678
9TKQ|1|D2|A|1679
9TKQ|1|D2|U|1680
9TKQ|1|D2|G|1681
9TKQ|1|D2|G|1682
*
9TKQ|1|D2|C|1706
9TKQ|1|D2|G|1707
*
9TKQ|1|D2|U|1751
9TKQ|1|D2|C|1752
*
9TKQ|1|D2|G|1756
9TKQ|1|D2|A|1757
9TKQ|1|D2|U|1758
9TKQ|1|D2|A|1759
9TKQ|1|D2|C|1760
9TKQ|1|D2|C|1761
9TKQ|1|D2|A|1762
9TKQ|1|D2|G|1763
9TKQ|1|D2|C|1764
*
9TKQ|1|D2|G|1988
9TKQ|1|D2|G|1989
9TKQ|1|D2|C|1990
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L3
- Chain BN
- Large ribosomal subunit protein uL14
- Chain BS
- Large ribosomal subunit protein bL19
- Chain D1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: