J5_9TKQ_009
3D structure
- PDB id
- 9TKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9TKQ|1|D2|U|2076, 9TKQ|1|D2|G|2428, 9TKQ|1|D2|G|2429, 9TKQ|1|D2|A|2430, 9TKQ|1|D2|U|2431, 9TKQ|1|D2|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TKQ|1|D2|U|2074
9TKQ|1|D2|U|2075
9TKQ|1|D2|U|2076
9TKQ|1|D2|A|2077
*
9TKQ|1|D2|U|2243
9TKQ|1|D2|U|2244
9TKQ|1|D2|U|2245
9TKQ|1|D2|G|2246
*
9TKQ|1|D2|C|2258
9TKQ|1|D2|U|2259
*
9TKQ|1|D2|A|2281
9TKQ|1|D2|G|2282
*
9TKQ|1|D2|C|2427
9TKQ|1|D2|G|2428
9TKQ|1|D2|G|2429
9TKQ|1|D2|A|2430
9TKQ|1|D2|U|2431
9TKQ|1|D2|A|2432
9TKQ|1|D2|A|2433
9TKQ|1|D2|A|2434
9TKQ|1|D2|A|2435
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain B1
- Large ribosomal subunit protein bL28
- Chain B6
- Large ribosomal subunit protein bL33
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BO
- Large ribosomal subunit protein uL15
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