J5_9TT7_003
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9TT7|1|L5|G|3606, 9TT7|1|L5|G|3611
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TT7|1|L5|G|2845
9TT7|1|L5|C|2846
9TT7|1|L5|A|2847
9TT7|1|L5|A|2848
9TT7|1|L5|G|2849
9TT7|1|L5|C|2850
9TT7|1|L5|OMC|2851
9TT7|1|L5|G|2852
9TT7|1|L5|G|2853
*
9TT7|1|L5|U|2877
9TT7|1|L5|G|2878
*
9TT7|1|L5|U|3599
9TT7|1|L5|G|3600
*
9TT7|1|L5|C|3604
9TT7|1|L5|G|3605
9TT7|1|L5|G|3606
9TT7|1|L5|A|3607
9TT7|1|L5|C|3608
9TT7|1|L5|C|3609
9TT7|1|L5|A|3610
9TT7|1|L5|G|3611
9TT7|1|L5|G|3612
*
9TT7|1|L5|C|3821
9TT7|1|L5|A|3822
9TT7|1|L5|C|3823
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
Coloring options: