J5_9TT7_004

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

9TT7|1|L5|A|3894, 9TT7|1|L5|A|4380, 9TT7|1|L5|G|4437, 9TT7|1|L5|U|4438, 9TT7|1|L5|U|4541, 9TT7|1|L5|U|4542

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TT7|1|L5|A|3889
9TT7|1|L5|G|3890
9TT7|1|L5|A|3891
9TT7|1|L5|A|3892
9TT7|1|L5|G|3893
9TT7|1|L5|A|3894
9TT7|1|L5|C|3895
9TT7|1|L5|C|3896
*
9TT7|1|L5|OMG|4378
9TT7|1|L5|G|4379
9TT7|1|L5|A|4380
9TT7|1|L5|U|4381
9TT7|1|L5|A|4382
9TT7|1|L5|A|4383
9TT7|1|L5|C|4384
9TT7|1|L5|U|4385
9TT7|1|L5|G|4386
*
9TT7|1|L5|C|4430
9TT7|1|L5|U|4431
9TT7|1|L5|U|4432
9TT7|1|L5|5MC|4433
9TT7|1|L5|G|4434
9TT7|1|L5|A|4435
9TT7|1|L5|U|4436
9TT7|1|L5|G|4437
9TT7|1|L5|U|4438
9TT7|1|L5|C|4439
*
9TT7|1|L5|G|4514
9TT7|1|L5|G|4515
9TT7|1|L5|UR3|4516
9TT7|1|L5|PSU|4517
9TT7|1|L5|PSU|4518
9TT7|1|L5|A|4519
9TT7|1|L5|G|4520
*
9TT7|1|L5|PSU|4538
9TT7|1|L5|A|4539
9TT7|1|L5|G|4540
9TT7|1|L5|U|4541
9TT7|1|L5|U|4542
9TT7|1|L5|U|4543

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain La

Large ribosomal subunit protein uL15

Chain Lb

60S ribosomal protein L29