J5_9TV2_002
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 9TV2|1|L5|C|2279, 9TV2|1|L5|U|2340
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|G|1331
9TV2|1|L5|G|1332
9TV2|1|L5|A|1333
9TV2|1|L5|G|1334
9TV2|1|L5|U|1335
9TV2|1|L5|OMC|1336
*
9TV2|1|L5|G|1512
9TV2|1|L5|G|1513
9TV2|1|L5|A|1514
9TV2|1|L5|C|1515
*
9TV2|1|L5|G|1654
9TV2|1|L5|U|1655
9TV2|1|L5|U|1656
9TV2|1|L5|C|1657
*
9TV2|1|L5|G|2278
9TV2|1|L5|C|2279
9TV2|1|L5|C|2280
*
9TV2|1|L5|G|2335
9TV2|1|L5|C|2336
9TV2|1|L5|A|2337
9TV2|1|L5|G|2338
9TV2|1|L5|A|2339
9TV2|1|L5|U|2340
9TV2|1|L5|OMC|2341
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- Large ribosomal subunit protein uL15
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
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