J5_9TV2_003
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9TV2|1|L5|G|3606, 9TV2|1|L5|G|3611
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TV2_003 not in the Motif Atlas
- Homologous match to J5_8GLP_003
- Geometric discrepancy: 0.0397
- The information below is about J5_8GLP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.4
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
9TV2|1|L5|G|2845
9TV2|1|L5|C|2846
9TV2|1|L5|A|2847
9TV2|1|L5|A|2848
9TV2|1|L5|G|2849
9TV2|1|L5|C|2850
9TV2|1|L5|OMC|2851
9TV2|1|L5|G|2852
9TV2|1|L5|G|2853
*
9TV2|1|L5|U|2877
9TV2|1|L5|G|2878
*
9TV2|1|L5|U|3599
9TV2|1|L5|G|3600
*
9TV2|1|L5|C|3604
9TV2|1|L5|G|3605
9TV2|1|L5|G|3606
9TV2|1|L5|A|3607
9TV2|1|L5|C|3608
9TV2|1|L5|C|3609
9TV2|1|L5|A|3610
9TV2|1|L5|G|3611
9TV2|1|L5|G|3612
*
9TV2|1|L5|C|3821
9TV2|1|L5|A|3822
9TV2|1|L5|C|3823
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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