J5_9TV2_005
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9TV2|1|L5|G|3908, 9TV2|1|L5|A|4362, 9TV2|1|L5|G|4363, 9TV2|1|L5|A|4364, 9TV2|1|L5|A|4365
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|PSU|3906
9TV2|1|L5|U|3907
9TV2|1|L5|G|3908
9TV2|1|L5|A|3909
*
9TV2|1|L5|U|4174
9TV2|1|L5|U|4175
9TV2|1|L5|U|4176
9TV2|1|L5|G|4177
*
9TV2|1|L5|C|4190
9TV2|1|L5|A|4191
*
9TV2|1|L5|OMU|4213
9TV2|1|L5|OMG|4214
*
9TV2|1|L5|C|4361
9TV2|1|L5|A|4362
9TV2|1|L5|G|4363
9TV2|1|L5|A|4364
9TV2|1|L5|A|4365
9TV2|1|L5|A|4366
9TV2|1|L5|A|4367
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
- Chain S6
- E-site tRNA
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