J5_9TZ9_003
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9TZ9|1|a|U|1265
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TZ9_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0818
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9TZ9|1|a|C|591
9TZ9|1|a|G|592
9TZ9|1|a|A|593
9TZ9|1|a|C|594
9TZ9|1|a|U|595
9TZ9|1|a|U|596
*
9TZ9|1|a|A|675
9TZ9|1|a|G|676
9TZ9|1|a|A|677
9TZ9|1|a|C|678
*
9TZ9|1|a|G|816
9TZ9|1|a|U|817
9TZ9|1|a|U|818
9TZ9|1|a|C|819
*
9TZ9|1|a|G|1205
9TZ9|1|a|C|1206
*
9TZ9|1|a|G|1260
9TZ9|1|a|C|1261
9TZ9|1|a|G|1262
9TZ9|1|a|A|1263
9TZ9|1|a|A|1264
9TZ9|1|a|U|1265
9TZ9|1|a|G|1266
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- Large ribosomal subunit protein bL20
- Chain h
- Large ribosomal subunit protein bL21
- Chain k
- Large ribosomal subunit protein uL15
- Chain w
- Large ribosomal subunit protein uL4
- Chain z
- Large ribosomal subunit protein bL35
Coloring options: