J5_9TZE_004

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9TZE|1|a|U|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZE|1|a|C|55
9TZE|1|a|G|56
9TZE|1|a|A|57
9TZE|1|a|U|58
9TZE|1|a|G|59
9TZE|1|a|A|60
9TZE|1|a|A|61
9TZE|1|a|G|62
*
9TZE|1|a|C|124
9TZE|1|a|G|125
9TZE|1|a|A|126
9TZE|1|a|A|127
9TZE|1|a|U|128
9TZE|1|a|G|129
*
9TZE|1|a|C|138
9TZE|1|a|A|139
*
9TZE|1|a|U|152
9TZE|1|a|A|153
9TZE|1|a|U|154
*
9TZE|1|a|A|180
9TZE|1|a|G|181
9TZE|1|a|G|182

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

Large ribosomal subunit protein bL34