J5_9VVI_006
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9VVI|1|a|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9VVI_006 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0789
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9VVI|1|a|C|584
9VVI|1|a|G|585
9VVI|1|a|A|586
9VVI|1|a|C|587
9VVI|1|a|U|588
9VVI|1|a|U|589
*
9VVI|1|a|A|668
9VVI|1|a|G|669
9VVI|1|a|A|670
9VVI|1|a|C|671
*
9VVI|1|a|G|809
9VVI|1|a|U|810
9VVI|1|a|U|811
9VVI|1|a|C|812
*
9VVI|1|a|G|1195
9VVI|1|a|C|1196
*
9VVI|1|a|G|1250
9VVI|1|a|C|1251
9VVI|1|a|G|1252
9VVI|1|a|A|1253
9VVI|1|a|A|1254
9VVI|1|a|U|1255
9VVI|1|a|G|1256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- 50S ribosomal protein L21
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