J5_9WNR_008
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9WNR|1|b|A|2448, 9WNR|1|b|U|2449, 9WNR|1|b|U|2585, 9WNR|1|b|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WNR|1|b|G|2057
9WNR|1|b|A|2058
9WNR|1|b|A|2059
9WNR|1|b|A|2060
9WNR|1|b|G|2061
9WNR|1|b|A|2062
9WNR|1|b|C|2063
9WNR|1|b|C|2064
*
9WNR|1|b|G|2446
9WNR|1|b|G|2447
9WNR|1|b|A|2448
9WNR|1|b|U|2449
9WNR|1|b|A|2450
9WNR|1|b|A|2451
9WNR|1|b|C|2452
9WNR|1|b|A|2453
*
9WNR|1|b|U|2500
9WNR|1|b|C|2501
9WNR|1|b|G|2502
9WNR|1|b|A|2503
9WNR|1|b|U|2504
9WNR|1|b|G|2505
9WNR|1|b|U|2506
9WNR|1|b|C|2507
*
9WNR|1|b|G|2582
9WNR|1|b|G|2583
9WNR|1|b|U|2584
9WNR|1|b|U|2585
9WNR|1|b|U|2586
9WNR|1|b|A|2587
9WNR|1|b|G|2588
*
9WNR|1|b|C|2606
9WNR|1|b|G|2607
9WNR|1|b|G|2608
9WNR|1|b|U|2609
9WNR|1|b|C|2610
9WNR|1|b|C|2611
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain Y
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L15
- Chain n
- 50S ribosomal protein L16
- Chain t
- 50S ribosomal protein L22
- Chain y
- Large ribosomal subunit protein bL27
- Chain z
- eRAP-NC
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